Supplementary
Lecture slides
Content
Welcome
Curriculum
Schedule
Learning Python
1
Preface
2
Before you begin
3
Appendix: Conda environment for BSF
4
Writing a program
5
Dealing with values
6
The order of events
7
Course tools
8
Controlling behavior
9
Organizing code
10
Values are objects
11
Lists of things
12
Pairs of things
13
Grouping values
14
Iterating values
15
Working with files
16
Structuring data
17
Recursion
18
Testing your code
Python projects
19
Translating ORFs
20
Primer analysis
21
Pairwise alignment
22
Codon usage
23
HIV sub-groups
24
Sequence trees
25
Finding genes
26
Genome assembly
Web exercises
27
GWAS candidates
28
CCR5-delta32
29
MRSA
30
Aardvark?
31
Plasmid ORFs
32
Read mapping
33
Neural networks
Supplementary
Project files
Lecture recordings
Lecture slides
Databases and resources
Assignments
Exam info
Supplementary
Lecture slides
Lecture slides
Week 1
Monday
Wednesday
Week 2
Monday
Wednesday
Week 3
Monday
Wednesday
Week 4
Monday
Wednesday
Week 5
Monday
Wednesday
Week 6
Monday
Wednesday
Week 7
Monday
Wednesday
Week 8
Monday
The Wednesday lecture was canceled.
Week 9
Monday
Wednesday
Week 10
Monday
Wednesday
Week 11
Monday
Wednesday
Week 12
Monday
Wednesday
Week 13
Monday
Wednesday
Week 14
Monday
Wednesday
Lecture recordings
Databases and resources